Home > Divisions > Epidemiology and Biostatistics

Epidemiology and Biostatistics

  • About Us

    Head of Division:  Associate Professor Maia Lesosky BSc MSc PhD Guelph

    Contact Information:

    Division of Epidemiology and Biostatistics
    School of Public Health and Family Medicine
    Faculty of Health Sciences
    University of Cape Town
    OBSERVATORY
    7925
    South Africa

    Senior Secretary:  Jolene Brooks
    Tel: +27 21 406 6578
    Fax:+27 21 406 6764
    Email: Jolene Brooks


    Click here for information about our Masters Programme
     

    The Division of Epidemiology and Biostatistics leads teaching and research around quantitative research methods in the School and Faculty. Courses taught from the Division include Introduction to Epidemiology, Quantitative Research Methods, Advanced Epidemiology, Evidence-Based Health Care, Clinical Epidemiology, Infectious Diseases Epidemiology, Non-Communicable Diseases Epidemiology, and a range of biostatistics courses (in conjunction with the Department of Statistical Sciences). 


    The Division has a joinable mailing list – we use this to announce our seminars, workshops and short courses. Please join if you wish to hear about Division hosted activities.

    The Division of Epidemiology and Biostatistics has a joinable mailing list – we use this to announce our seminars, workshops and short courses. Please join if you wish to hear about Division hosted activities.

    How to sign up to DivEB mail list:

    1. Send an email to epibio-division-l-join@lists.uct.ac.za.
    2. Your subscription to the mailing list will be confirmed by email.

    How to leave the DivEB mail list:

    1. Send an email to epibio-division-l-leave@lists.uct.ac.za
    2. Your request will be processed and your removal from the mailing list will be confirmed by email.

    How to send a message to the DivEB mail list:

          1. Email epibio-division-l@lists.uct.ac.za

          Note that this will email ALL the people on the list.


    Newsletters

    Jul/Aug 2019

    May/Jun 2019

    Apr 2019

    Feb/Mar 2019

    Jan 2019

  • Undergraduate Teaching

    The Division assists with undergraduate epidemiology and biostatistics teaching in the MBChB curriculum (including during Semesters 3-5, and as part of the 4th year Public Health teaching programme) and as part of research methods teaching for allied health sciences students.

  • Postgraduate Teaching

    The Division provides epidemiology and biostatistics teaching at both introductory and advanced levels. Most of the Division's teaching is through the Master of Public Health (MPH) programme, where the Division convenes the Epidemiology and Biostatistics track.

    Courses taught by the Division include:

    • Introduction to Epidemiology
    • Advanced Epidemiology
    • Clinical Epidemiology
    • Seminars in Epidemiology
    • Infectious Diseases Epidemiology (taught in conjunction with the Division of Public Health Medicine)
    • Non-Communicable Diseases Epidemiology (taught in conjunction with the Division of Public Health Medicine)
    • Evidence-Based Health Care (taught in conjunction with the Department of Medicine)
    • Biostatistics I (Introduction to Biostatistics)
    • Biostatistics II (Linear & Logistic Regression Modelling)
    • Biostatistics III (Survival analyses and advanced topics) (taught in conjunction with the Department of Statistical Sciences)
       

    Additional teaching takes place on a range of short-courses and special seminars throughout the Faculty. This additional teaching typically focuses on either general research methods (study design, measurement, causal inference, etc) and/or specific advanced topics. Recent topics for short-courses and seminars include:

    • mathematical modelling of infectious diseases
    • structural equation modelling
    • missing data and imputation
    • modelling for causal inference
       

    In addition, the Division offers PhDs in Epidemiology and Biostatistics. While the PhD programme is by dissertation-only, most of our PhD students enter through the MPH, and/or participate in short-courses and seminars programme.

  • Consulting

    The Division of Epidemiology and Biostatistics offers an epidemiology and biostatistics consulting service within the Faculty of Health Sciences. The consulting unit provides services which include the following activities:

    • Advice regarding research design, sample size, questionnaire development and data collection methodologies
    • Guidance for data capturing and data management/cleaning
    • Analysis and reporting of data and assistance with data interpretation
    • Short training courses on request


    Clientele include:

    • Postgraduate student research projects (including Honours, research Masters, PhD)
      Postdoctoral researchers
    • Research / academic staff
    • For coursework masters students, assistance is provided only for dissertations and not for coursework assignments

     

    Please note:

    • A brief scoping consultation is provided at no cost prior to formally requesting consulting services.
    • Thereafter, the unit operates on a cost-recovery basis and all billable work is charged for at an hourly rate (currently R500/hour), payable via internal fund transfer within 14 days of the completion of work. Note that we do not charge students directly, supervisors and/or units are responsible for funding statistical support if required by their students and must make initial contact.
    • It is strongly recommended that clients contact the consulting unit prior to the onset of their project.
    • Supervisors wishing to access services for student postgraduate projects are required to make initial request to the consulting unit.
    • The service is provided subject to the availability of consultants. The consulting unit reserves the right to terminate or refuse service.

     

    To request consulting services, please contact the unit via email: epibios.consult@uct.ac.za

  • Research

    Research interests and activities in the Division include:

    • Methods for modelling longitudinal data
    • Infectious diseases epidemiology, including HIV, tuberculosis and sexually transmitted infections
    • Maternal and child health
    • Cardiovascular diseases
    • Women's reproductive health, including contraception and termination of pregnancy
       

    Researchers in the Division collaborate with investigators in other parts of the School of Public Health and Family Medicine (including CIDER and WHRU) and the Faculty (including the Departments of Paediatrics and Child Health, Clinical and Laboratory Sciences, Psychiatry and Mental Health, Medicine).

  • R Software Workshops

    Division of Epidemiology & Biostatistics 2021 R Training
    Registration information

    Date

    Time

    Topic

    Venue

    Level

    Registration link

    Feb 12

    9:30-12:30

    8. Advanced modelling / analysis

    Online

    Advanced

    https://forms.gle/ggWA9iNTTrumhTAR8

    Mar 5

    9:30-12:30

    1. Introduction to R

    Online

    Beginner

    https://forms.gle/LZkH4hfgspekqbCcA

    Mar 19

    9:30-12:30

    9. Data visualisation with R

    Online

    Advanced

    https://forms.gle/12a3bt887wdCyS8S8

    Apr 9

    9:30-12:30

    2. Group summaries and comparisons + epiR part 1

    TBD

    Beginner

    https://forms.gle/eYFsbsN6KkcAU8BcA

    Apr 30

    9:30-12:30

    3. Group summaries and comparisons + epiR part 2

    TBD

    Beginner

    https://forms.gle/mtefApg8UgNbBarL9

    Aug

    TBD

    4. Regression models in R

    TBD

    Intermediate

    Registration circulated in June

    Aug 

    TBD

    5. Intermediate data handling

    TBD

    Intermediate

    Registration circulated in June

    Sept 

    TBD

    6. Survival analysis in R

    TBD

    Intermediate

    Registration circulated in June

    Jan 2022

    TBD

    7. Advanced data handling

    TBD

    Advanced

    Registration circulated in Jan

     

    Fees:
    For currently registered staff or students in the School of Public Health & Family Medicine there is no fee. For all other participants, there is a R500/course fee payable through internal journal transfer only. You must be a member of UCT (ie have a valid UCT email address) in order to participate. A signed journal or proof of transfer will be required before access is granted.


    How to register:
    Follow the link for the course you want to register for. It is a small form that collects email addresses. Please use your UCT email address.

    Request the internal journal transfer to 232826, PPH1228. Please send proof of payment to: Jolene.Brooks@uct.ac.za.

    You will receive a link to the online meeting venue, plus other information a few days before the scheduled workshop once registered and proof of payment submitted via your UCT email.


    Course content:
    These courses are mainly aimed at current MPH and PhD students in the School of Public Health & Family Medicine, and so are oriented towards serving those groups as they complete their coursework and dissertation. Instructors and content will vary by course. These courses will be offered annually.
    If you would like to discuss a bespoke course please email epibios.consult@uct.ac.za


    Contact:
    To join the Division mail list to get course announcements go to https://lists.uct.ac.za/lists.php, search for epibio-division-l@lists.uct.ac.za, click Join.

    For admin matters please contact Senior Secretary Jolene.Brooks@uct.ac.za

    For other matters relating to the Division, please contact Head of Division maia.lesosky@uct.ac.za

  • People

    Maia Lesosky, Associate Professor and Head of Division

         

     

    Email:  maia.lesosky@uct.ac.za

    Phone:  021 650 4532

    Publications

     

     


    Biostatistician and Associate Professor, Division of Epidemiology and Biostatistics, School of Public Health and Family Medicine. Contributing Investigator with CIDRI-Africa (Wellcome Trust Centre), and with the NIHR Unit IMPALA studying respiratory outcomes across Africa. Maia has previously worked as Senior Lecturer – Medical Statistics – in the Department of Medicine at the University of Cape Town, as Extraordinary Lecturer in the Faculty of Veterinary Sciences at the University of Pretoria and as a research fellow at the University of Edinburgh, Institutes of Evolutionary Biology, Immunology and Infections Research and the Roslin Institute and at the Institute of Mathematics, Aalto University. She completed her PhD in 2009 in the Department of Mathematics and Statistics at the University of Guelph, Canada with research on statistical inverse problems. Current interests are in supervised learning as related to cytokine and other biomarker assay profiles, particularly in TB disease progression and Bayesian mixture models for longitudinal HIV viral load data. Constant distractions are statistical graphics, ‘composite’ statistical methods, algorithmic statistical methods (aka machine learning) and R programming. The Biostats Lab works with the Cape-R Users Group to promote R programming around the Cape and wider afield. Please join if you are local to Cape Town (twitter @CapeRUser). We also run a regular statistical methods seminar series on the Health Sciences Faculty – announced on web and via twitter (@EpiBiostats_UCT).

    Landon Myer, Professor, Head of Department and Director of School

           

     

    Email:  landon.myer@uct.ac.za

    Phone:  021 406 6661

    Publications

     

     


    Landon Myer is Director and Head of the School of Public Health and Family Medicine at the University of Cape Town, South Africa. He has training in social anthropology, clinical medicine and epidemiology. His research focuses on women's, maternal and child health in the context of HIV. He has lead multiple clinical and health systems studies investigating the health of HIV-infected women receiving ART during pregnancy and postpartum, as well as the health and development of HIV-exposed and -infected children and adolescents.

    Lara Dugas, Professor and AXA Research Chair in Non-Communicable Disease (NCD) Epidemiology (2021-2026)

     

    EmailLara.Dugas@uct.ac.za

    Publications

     

     

     

    Professor Lara Dugas, PhD, MPH, FTOS received her doctorate in Exercise Physiology from the UCT. In 2007 she joined Loyola University Chicago (LUC), utilising her training in the measurement of human metabolism, including whole body energy expenditure, diet and physical activity monitoring. In 2011, she completed her Masters in Clinical Research Methods and in 2013 she obtained her MPH in Epidemiology. In 2016 she was named LUC Stritch School of Medicine Junior Scientist of the year, and in the same year became a fellow of The Obesity Society. In 2020 she was awarded an Honorary Professorship at UCT. She maintains a joint appointment between UCT and LUC. Her research explores NCD risk in African-origin populations spanning the epidemiologic transition. Her focus is the role of the gut microbiota and intermediary metabolites, focusing on short chain fatty acids on obesity and diabetes risk. She currently has two NIH-funded studies, exploring the role of the gut microbiota and NCD risk in 5 African-origin populations and 2021 was awarded the AXA Research Chair in Non-Communicable Disease (NCD) Epidemiology (2021-2026).

    Tamsin Phillips, Senior Lecturer/Research Officer

     

     

    Email:  tammy.phillips@uct.ac.za

     

     

     

     

    Tamsin Phillips is an epidemiologist in the Division of Epidemiology and Biostatistics.  Her research focus is the continuum of care for women living with HIV. Her PhD investigated the impact of mobility and care transitions on adherence and retention in HIV care among pregnant and postpartum women in Gugulethu. She is also interested in the methodological considerations for measuring retention and adherence and the use of mobile health and smartphone technology for supporting the HIV care continuum. Tamsin recently received a VECD Fogarty Global Health Postdoctoral Fellowship through which she will explore longer-term patterns of disengage and re-engage in HIV care among postpartum women. She also teaches Introduction to Biostatistics as part of the MPH programme.

    Kirsty Brittain, Lecturer/Research Officer

     

           

     

    Email:  kirstybrittain@gmail.com

     

     

     

    Kirsty Brittain is a Research Officer in the Division of Epidemiology and Biostatistics. Her research interests include psychosocial aspects of maternal, child and adolescent health, including adherence and engagement in HIV care, behavioural risk factors, and mental health problems. Her current work focusses on pregnant and postpartum women living with HIV, with a particular emphasis on HIV-status disclosure and experiences of stigma. She teaches Introduction to Epidemiology as part of the Master of Public Health programme.

    Hlengiwe Madlala, Lecturer/Research Officer

     

     

     

    Email:  Hlengiwe.madlala@uct.ac.za

     

     

     



    Hlengiwe Madlala is a PhD Physiologist who recently completed her MPH and currently work as a Research Officer in the Division of Epidemiology and Biostatistics. Her research interests are co-morbidity of maternal obesity and HIV infection in pregnancy and underlying mechanisms for adverse birth outcomes. She manages a population-based cohort evaluating adverse pregnancy outcomes under the new policy of Option B+ strategy for prevention of mother-to-child transmission (PMTCT).

    Elton Mukonda, Lecturer/Research Officer

     

     

    Email:  elton.mukonda@uct.ac.za

     

     

     

     


    Elton currently works as a Research Officer in the Division of Epidemiology and Biostatistics. He is a trained demographer and also has experience working as a statistician and data analyst. He completed his MPhil in Demography in 2015 at the Centre for Actuarial Research (CARe), University of Cape Town, with research on estimating mortality for metropolitan populations in developing countries. Current interests include economic evaluation, statistical learning, longitudinal data analysis, actuarial modelling and bayesian statistics.

    Thokozile Malaba, Lecturer/Research Officer

     

     

    Email:  Thoko.Malaba@uct.ac.za

     

     

     


    Thoko Malaba is an epidemiologist in the Division of Epidemiology and Biostatistics at the University of Cape Town.  Her work focuses primarily on maternal and child health in the context of HIV, particularly the use of antiretroviral therapy in pregnancy.  She is currently involved in clinical, population-based and health systems research studies in HIV-infected women using different antiretroviral therapy regimens in pregnancy.  Her specific research interests are adverse birth outcomes and the methodological issues encountered in perinatal research studies.

    Frissiano Honwana, Assistant Lecturer

             

     

    Email:  Frissiano.Honwana@uct.ac.za

     

     

     



    Frissiano Honwana is an assistant lecturer in the Division of Epidemiology and Biostatistics. He completed his Masters in Statistics at University of KwaZulu-Natal. His areas of interest are longitudinal data analysis and infectious disease modelling. Frissiano is a member of South African Statistical Association (SASA).

    Jasantha Odayar, Clinical Research Officer

     

     

     

     

    Email:  Jasantha.Odayar@uct.ac.za


     




    Jasantha Odayar is an epidemiologist in the Division of Epidemiology and Biostatistics and the Centre for Infectious Disease Epidemiology and Research (CIDER).  Her interests are in improving health care services, particularly for individuals requiring long-term care, including for HIV and TB.  She manages an implementation science trial (“PACART”) comparing routine clinics to community-based adherence clubs for antiretroviral therapy (ART) delivery in HIV-positive postpartum women who initiated ART in pregnancy. 

    Tracy Glass, Statistical Analyst

     

     

             

    Email:  Tracy.Glass @uct.ac.za

     

     



    Tracy Glass (PhD candidate, UCT), currently works as a data analyst at the Division of Epidemiology and Biostatistics, UCT.  She completed the Masters in Public Health in 2016, specialising in epidemiology and biostatistics. Tracy previously worked as a research intern at the Burden of Disease Research Unit (BODRU), at the South African Medical Research Council. Her current interest include disease modelling.

    Stanzi le Roux, PhD candidate

     

             

     

     


     

     

     

     

    Dr Stanzi le Roux is a doctoral student and clinical epidemiologist in the School of Public Health and Family Medicine, University of Cape Town. She has a background in clinical paediatrics and child health, with previous appointments at the clinical research unit in Red Cross War Memorial Children's Hospital, and the Desmond Tutu TB research Centre at Tygerberg Hospital, in Cape Town. Her research focus is maternal and child health in the context of infectious diseases in southern Africa, and she is currently completing her doctoral thesis on comparative health outcomes of HIV-exposed uninfected children.

    Chukwudi Nnaji, PhD candidate

     

             

    LinkedIn Profile

    Twitter handle: @ChuxNesta_Nnaji

     



    Chukwudi Nnaji is a Nigerian medical doctor, with a Bachelor of Medicine and Bachelor of Surgery (MBBS) degree. He completed his Master of Public Health (MPH) study at the University of Cape Town – with distinction in 2018, and now studying towards a Doctor of Philosophy (PhD) in Public Health at the Division of Epidemiology and Biostatistics. He is a Fellow of the Royal Society of Tropical Medicine and Hygiene (RSTMH) and currently working as an adjunct Senior Scientist/Epidemiologist at Cochrane South Africa, based at the South African Medical Research Council (SAMRC), Cape Town.

    His research interests are in the areas of evidence based medicine, infectious disease epidemiology, vaccinology and vaccine implementation science. His PhD research aims to use multilevel analytical approaches to evaluate the burden, as well as individual-level and contextual enablers of missed opportunities for vaccination; while using the findings to design context-tailored quality improvement strategies for addressing identified missed opportunities for vaccination. He is supervised by Prof. Charles Wiysonge, Associate Prof. Maia Lesosky and Dr Duduzile Ndwandwe.

    Honorary Professors:

    D Bradshaw
    S Delaney-Moretlwe
    J McIntyre
    C Wiysonge

    Honorary Associate Professors:

    L Dodd
    M Rangaka
    S Reynolds

    Adjunct Associate Professor:

    T Tucker

    Honorary Senior Lecturers:

    Annibale Cois

     

    Email:  acois@sun.ac.za

    Publications

     

     

     

     

     

    Dr Annibale Cois is an Epidemiologist and Biostatistician, and a researcher in the Department of Global Health at Stellenbosch University. He holds an honorary position as a Senior Lecturer in the Division of Epidemiology and Biostatistics at the School of Public Health of the University of Cape Town.

    His background includes Master Degrees in Electrical Engineering (University of Cagliari, Italy) and Public Health (University of Cape Town), and a PhD in Public Health (University of Cape Town).

    His current research interests focus primarily on the epidemiology of non-communicable diseases and associated risk factors in low- and middle-income countries and the application of advanced statistical methods for the joint analysis of multiple heterogeneous data sources. 

    Recent works include the application of latent variables techniques to the estimation and modelling of measurement error in anthropometric characteristics in large-scale surveys; the joint analysis of multiple datasets to recover long-term trends in blood pressure, body mass index and other cardiovascular risk factors; the study of seasonal patterns of cardiovascular risk factors in the South African population and their socioeconomic correlates; the application of Bayesian estimation methods for the study of population pattern of alcohol consumption.

    Dvora Joseph Davey

     

     

     

     

     

     


    Dr. Dvora Joseph Davey is an Honorary Senior Lecturer in the Division of Biostatistics and Epidemiology at the University of Cape Town. Dr. Davey received her Master’s Degree in Public Health from Columbia University and her PhD in Epidemiology from the University of California, Los Angeles. Dr. Davey has over eighteen years’ experience in international health with extensive experience in the design, management and evaluation of HIV prevention and care, sexual, reproductive health interventions and studies.  Her current research focuses on evaluating how best to prevent HIV in pregnant and breastfeeding women, including sexually transmitted infection (STI) diagnosis and treatment, and pre-exposure prophylaxis (PrEP) in pregnant and breastfeeding women.

    Nathan Ford

    Kevin Kelly

    Melissa Wallace

    Jennifer Pellowski

    Honorary Research Associate:

    Jabulani Ncayiyana

     

     

    Publications

     

     

     

     

    Jabulani Ncayiyana is an epidemiologist with research interests in infectious diseases, child and adolescent health, spatial epidemiology and implementation science.

 

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